doi:10.1369/jhc.5A6758.2005
Volume 54 (1): 97-107, 2006 Copyright ©The Histochemical Society, Inc. Computerized Morphometric Analysis of Pathological Prion Protein Deposition in Scrapie-Infected Hamster Brain
Laboratory of Bacterial, Parasitic and Unconventional Agents, Division of Emerging and Transfusion-Transmitted Diseases, Office of Blood Research and Review, Center for Biologics Evaluation and Research, United States Food and Drug Administration, Rockville, Maryland Correspondence to: Olga A. Maximova, Laboratory of Bacterial, Parasitic and Unconventional Agents, Division of Emerging and Transfusion-Transmitted Diseases, Office of Blood Research and Review, Center for Biologics Evaluation and Research, United States Food and Drug Administration, 1401 Rockville Pike, HFM-313 Rockville, Maryland 20852-1448. E-mail: maximova{at}cber.fda.gov
Transmissible spongiform encephalopathies (TSEs or prion diseases) are characterized by a constellation of typical though variable pathological changes in the brain. Deposition of disease-associated abnormal prion protein (PrPSc) is the pathological feature of TSEs most consistent and accessible for quantification. However, the evaluation of PrPSc deposits detected by immunohistochemical techniques has been traditionally based on arbitrarily assigned semiquantitative scores. This approach is limited by its subjectivity and bias, yielding considerable variability. In this study, we used MetaMorph 6.1 image analysis software for quantitative analysis of immunostained PrPSc deposits in the CNS of hamsters infected with the 263K strain of scrapie agent. Computerized morphometric analysis (CMA) allowed unambiguous detection of even minimal amounts of immunostained PrPSc. CMA values for intensity of staining and area stained correlated well with semiquantitative scores, providing reproducible quantitative data and objective criteria for analyzing PrPSc deposition. CMA provides a simple and reliable method for improved and consistent diagnosis of TSEs that may also be used to quantify other immunostained biomarkers. (J Histochem Cytochem 54:97107, 2006)
Key Words: digital imaging hue-saturation-intensity immunohistochemistry morphometry prion disease scrapie prion protein transmissible spongiform encephalopathy
THE TRANSMISSIBLE SPONGIFORM ENCEPHALOPATHIES (TSEs or prion diseases) form a heterogeneous group of progressive, uniformly fatal neurodegenerative disorders associated with infectious agents termed TSE agents or prions (Prusiner 2001
TSEs are characterized by a constellation of typical though variable pathological changes in the brain including vacuolation (spongiform changes), loss of neurons, and proliferation and hypertrophy of astrocytes, without inflammation or primary demyelinization, and accumulation of an abnormal form of the prion protein (designated "scrapie-type" PrP or PrPSc). PrPSc (sometimes called PrPres) is characterized by a loss of normal solubility in detergent-salt solutions and a relative resistance to digestion by the proteolytic enzyme proteinase K. The normal cellular form of PrP is called PrPC or PrPsen, because of its sensitivity to proteinase K digestion. In almost all cases of TSE in animals and humans, PrPSc is detectable in the brain parenchyma. Furthermore, the abnormal prion protein is considered to be the most probable cause of the other neuropathological changes in brains of animals and humans with TSEs (DeArmond 2004
PrPSc is often detected by Western immunoblotting (Bellon et al. 2003
The evaluation of PrPSc deposition in tissues by IHC has traditionally been based on arbitrarily assigned semiquantitative scores. The data generated by such subjective estimations have most often been expressed by grading immunostaining on a rough numerical scale, with "" meaning no staining and "+++" or "++++" indicating a very strong positive signal. This approach is useful but inherently limited by observer subjectivity and bias, yielding considerable variability, particularly when tissue sections show minimal staining. Because the development of digital microscopic image analysis, substantial efforts have been made to correlate the evaluations made by experienced pathologists with quantitative values (Kohlberger et al. 1997
TSE Agent The TSE agent employed was the hamster-adapted 263K strain of scrapie agent (Kimberlin and Walker 1977
Animals and Inoculations
Tissue Collection
Immunohistochemistry Formalin-fixed paraffin-embedded 5 µm thick brain tissue sections were mounted on CSS-100 silylated slides (Cel Associates, Inc.; Pearland, TX) that bind sections covalently by Schiff base aldehyde-amide chemistry (www.cel-1.com). The sections were then deparaffinized and rehydrated in graded alcohols to distilled water. To enhance antigen retrieval (Van Everbroeck et al. 1999
Semiquantitative Evaluation of PrPSc Detected by IHC
Digital Image Acquisition
Image Analysis
Automated Discrimination of PrPSc Immunostaining We next defined the "negative-chromaticity subdomain" (i.e., HSI threshold values range that included every pixel in the digital image of the negative control tissue section). First, we examined a set of 10 negative-control images from brain tissue sections of sham-inoculated animals. This kind of negative control should have contained any residual normal PrPC not entirely digested by proteinase K at the concentration used. Second, we evaluated 10 negative control images from brain tissue sections of scrapie-infected animals processed with the same IHC protocol but in which the primary mouse anti-PrP antibody was replaced with normal mouse IgG. To select the inclusive HSI threshold value range we used the MetaMorph <Set Color Threshold> command. For every pixel in an image, the values of hue, saturation, and intensity are transformed independently to one of 256 integral values from 0 to 255, and a range of values to be counted as "data of interest" can be selected for each parameter. Figure 2 shows the MetaMorph 6.1 window display during selection of the HSI value range for the negative control image of cerebellum of sham-inoculated hamster brain. The inclusive threshold value range for hue was increased until all pixels present in the image were included. Threshold values for saturation and intensity; however, we allowed to include the entire range of all possible values (0255) present. The thresholded image in Figure 2 displays each pixel transmitting light of HSI properties within the selected threshold range by overlaying with operator-selected orange "pseudocolor." For this particular image, the selected inclusive threshold range of 0185 for hue and 0255 for both saturation and intensity appeared to include every pixel. Nevertheless, the percentage of thresholded area to whole area of the image was calculated to confirm the accuracy of inclusive threshold range selected. The exact HSI threshold range for the negative control image was defined when the percentage of thresholded area was 100%, meaning that all color information associated with the negative control section fell within the defined HSI negative-chromaticity subdomain (Figure 2).
We calculated a mean hue range of 0 to 180 with a standard deviation of the upper bound of ±5 for a set of 20 negative control images (data not shown) and defined a hue threshold range of 0185 (mean plus one standard deviation for the upper limit). Hence, the chromaticity subdomain for negative control images was defined (hue 0185, saturation 0255, and intensity 0255). The next step was to define similarly a positive-chromaticity subdomaina set of HSI threshold value ranges selected such that no pixel with the negative-control hue would confound the identification of positively stained areas. It was reasonable to assume that a subdomain selected from the hue range remaining after subtracting the negative control range should carry color information for a stain of another hue not present in the negative control. In our experiments, to visualize PrPSc we used Vector Red chromogen that produces a magenta-red colored product. Because all negative-control pixels had hue values ranging from 0 to less than 185, we set hue thresholds for positive pixels at 185255 (Figure 3 ). Threshold values for saturation and intensity we again allowed to include the entire possible ranges of 0255. When we applied this positive threshold value range to negative-control images, as predicted, no pixels were identified. Thus we defined the positive-chromaticity subdomain for PrPSc immunostaining in the threshold range of hue 185255, saturation 0255, and intensity 0255. The hue threshold value ranges defined in this way unambiguously discriminated each pixel as either negative or positive without any need to threshold for saturation. Intensity must be displayed over its entire range of values to evaluate the optical density of immunostaining and could not be thresholded.
Statistical Analysis The JMP statistical analysis package (SAS Institute, Inc.; Cary, NC) was used to calculate the Pearson simple correlation between thresholded area and total integrated optical density of PrPSc deposits, and the standard deviations of the distributions within different size categories of positively stained objects. The analytical routines contained in the MetaMorph 6.1 package were used to calculate the variance of optical density within PrPSc deposits of different sizes and in different anatomical areas.
Qualitative and Semiquantitative Evaluation PrPSc Immunostaining In this study, we performed visual qualitative evaluations of the tissue localization and patterns of accumulation of PrPSc, and we assigned semiquantitative scores for intensity of PrPSc immunostaining. Based on our multiple observations, we identified 10 major anatomic structures of hamster brain that consistently contained deposits of PrPSc after intracerebral inoculation with scrapie agent: (1) periependymal zone of olfactory ventricles, (2) neocortex, (3) striatum, (4) hippocampus, (5) thalamus, periependymal zones of (6) lateral ventricle, (7) third ventricle, and (8) fourth ventricle, (9) cerebellum, and (10) brain stem. Analyses of the topographical localizations of PrPSc deposits within the affected brain regions revealed four major patterns: parenchymal, subpial, perivascular, and periependymal types (Figure 4 ). The parenchymal pattern was a diffuse fine deposition of PrPSc in the neuropil. A second pattern (subpial pattern) was deposition of PrPSc in subpial spaces of the central nervous system. Deposits of PrPSc within perivascular spaces (perivascular pattern) were also observed frequently in brains of hamsters infected with scrapie. A fourth distinct pattern observed consistently was deposition of PrPSc in subependymal spaces of the ventricular system of the brain. It may be noteworthy that deposits of PrPSc were often seen on the luminal surface of ventricular walls, suggesting association with cilia of ependymal cells. The cytoplasm of ependymal cells nevertheless appeared to be intact. Based on the features described here, we defined this fourth pattern of PrPSc deposition as periependymal (Figure 4D). The patterns of accumulation of PrPSc itself were presented as diffuse, punctate, or synaptic-like immunostaining; scattered granular; and coarse deposits often forming amorphous masses. To evaluate the intensity of PrPSc immunostaining, we assigned semiquantitative scores using the grading scale described in Materials and Methods. Figure 5 displays representative brain tissue fields corresponding to each semiquantitative score (0, +, ++, and +++).
Computerized Morphometric Analysis of PrPSc Immunostaining We analyzed thresholded PrPSc immunostaining in scrapie-infected tissue sections using the <Integrated Morphometry Analysis> tools of MetaMorph 6.1 (Figure 3). Two general morphometric categories were analyzed to characterize PrPSc immunostaining: spatial features and intensity. The definitions for morphometric parameters measured are given in Table 1. The intensity of PrPSc immunostaining was evaluated by measuring the optical density expressed as the inverse logarithm of the grayscale transmittance of each thresholded pixel.
As noted previously, we observed four distinct patterns of PrPSc accumulation in brains of scrapie-infected hamsters distinguished by sizes and shapes of the stained deposits (diffuse, punctate, scattered granular, and coarse deposits). However, different affected areas of brain tissue with PrPSc immunostaining that had been assigned moderate (++) and strong (+++) semiquantitative scores all contained mixed patterns. The areas of tissue with weak (+) semiquantitative scores demonstrated uniform patterns of diffuse PrPSc immunostaining. We performed computerized morphometric analysis (CMA) of patterns of PrPSc accumulation using images of brain tissue fields corresponding to each semi-quantitative score. The distribution of PrPSc deposits based on the number of objects and their size in affected brain areas versus semiquantitative scores is plotted in Figure 6 . The images of affected tissue fields with weak PrPSc immunostaining (+) were comprised of small uniformly stained objects, each less than 5 µm2 in area. In images with moderate immunostaining (++), all four staining patterns of PrPSc accumulation were present; diffuse immunostaining was still predominant, but objects of larger sizes (51000 µm2) were also found. Finally, images with strong immunostaining contained a fifth population of large objects with areas of 100010,000 µm2, represented by coarse confluent PrPSc deposits often forming amorphous masses.
We also performed analysis of the distributions of optical density within PrPSc deposits of different sizes. The <Integrated Morphometry Analysis> tool of MetaMorph 6.1 measures the optical density variance by assigning values from 0 to 1.0, where variance approaches zero for objects of uniform density. All PrPSc deposits found in different areas of scrapie infected hamster brain demonstrated very uniform distribution of optical density (<0.01) regardless of the object size (data not shown). The data generated by CMA also allowed us to analyze the relationship between a spatial parameter (the positive thresholded area) and the intensity of PrPSc immunostaining expressed as total integrated optical density (IOD) (Figure 7 ). The areas of scrapie-infected hamster brain tissue occupied by PrPSc immunostaining had a linear relationship with the IOD of PrPSc deposits (Pearson simple correlation, r = 0.9920). Interestingly, when the quantitative data obtained from the analysis of 30 images of different affected areas (3 images per area) were plotted on the chart, they appeared to be grouped into two distinct clusters (A and B, Figure 7). The first cluster contained only data from images corresponding to weak (+) PrPSc immunostaining. A second cluster included data from images corresponding to both moderate (++) and strong (+++) scores. The difference in quantitative data (thresholded area and IOD) between these two clusters was about three orders of magnitude. Hence, the quantitative data for PrPSc immunostaining generated by CMA correlated well with visual semiquantitative scores but were more informative, providing objective criteria that discriminated the extent and intensity of PrPSc immunostaining in scrapie-affected tissue.
This study describes a novel method for quantitative computer-assisted image analysis of IHC-stained PrPSc. Our goal was to develop objective quantitative criteria that reliably identified brains of hamsters experimentally infected with a laboratory strain of scrapie agent. Having done that, we plan to apply the method to other tissues, other animal TSE infections, and, eventually, to human TSEs. To develop an objective method, we first standardized the IHC procedure for PrPSc to reduce variability and inconsistency in evaluations of tissue specimens. We used a combination of pretreatments previously reported to improve PrPSc detection (Sigurdson et al. 1999 Evaluation of immunostaining usually includes both spatial characterization and semiquantitative grading of intensity and amount of staining. In this study, we recorded anatomic localizations, patterns of PrPSc immunostaining, and visual estimates of the intensity of staining. Although experienced observers are probably quite accurate in localizing areas of immunostaining and patterns, their semiquantitative estimates of intensity or amount of staining are inherently limited by individual subjectivity and bias, leading to variation in readings by the same observer at different times as well as interobserver disagreement.
Since its early development, digital microscopic image analysis has offered the potential for improving the objectivity of microscopic observations and quantifying the results of IHC. Substantial efforts have already been made to convert the evaluations of experienced pathologists into quantitative values in cancer research (Kohlberger et al. 1997
The quantitative analysis of spatial parameters provided useful characterization of patterns of PrPSc deposition in brains of scrapie-infected hamsters. Within affected brain regions, PrPSc was present in small deposits less than 5 µm2 in area and coalescent deposits as large as 10,000 µm2. Interestingly, the measurement of optical density of immunostained objects demonstrated that in brain tissue of hamsters inoculated intracerebrally with 263K strain of scrapie agent PrPSc accumulated in aggregates of very uniform density. The distributions of pixel optical densities in PrPSc aggregates, regardless of object size, was very uniform without concentrating on the periphery or in the center of the object. The integrated optical density of PrPSc deposits reflected the intensity of positive immunostaining as a reciprocal function and was related directly to the area of brain tissue occupied by PrPSc immunostaining, so that either the total area strained or the total intensity of stain measured at the selected hue threshold range could be used to quantify PrPSc deposition. Both the quantification of area stained and integrated optical density of PrPSc immunostaining in selected fields correlated well with subjective evaluations by two independent observers. Other studies have also compared computerized image analysis with conventional semiquantitative scoring and concluded that the former had higher objectivity and reproducibility (Kohlberger et al. 1997 CMA of PrPSc immunostaining would be of greatest practical help to improve the diagnosis of TSEs when tissue is obtained during the preclinical incubation period or relatively early in disease. That would be important in itself and important for helping to assure the suitability of potential donors of human cadaveric tissues and sources of animal tissue used as ingredients and reagents in the manufacture of biological products. We plan to apply the quantitative morphometric analysis of PrPSc to evaluate brain and other tissues from humans and animals with TSEs with the goal of developing quantitative objective criteria that are sufficiently sensitive, specific, and reproducible to assist both in diagnosis of disease and in regulatory decision making.
The authors of this article have no duality of interest to declare. No endorsement by the FDA of the results or interpretation of this work or of any product used in the work is intended or should be inferred. We thank Dr. Richard Kascsak and colleagues (Institute for Basic Research in Developmental Disabilities, Staten Island, NY) who kindly provided us with the 7G5 mouse monoclonal antibody. We thank Drs. Gerald Feldman and Jacqueline Muller, FDA, for helpful review of the manuscript.
Received for publication June 14, 2005; accepted August 23, 2005
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