doi:10.1369/jhc.6A6960.2006
Volume 54 (12): 1437-1444, 2006 Copyright ©The Histochemical Society, Inc. Subcellular Localization of CIAPIN1
State Key Laboratory of Cancer Biology, Institute of Digestive Diseases, Xijing Hospital, The Fourth Military Medical University, Xi'an, Shaanxi Province, China Correspondence to: Daiming Fan, State Key Laboratory of Cancer Biology, Institute of Digestive Diseases, Xijing Hospital, The Fourth Military Medical University, Xi'an 710032, Shaanxi Province, China. E-mail: fandaim{at}fmmu.edu.cn
Cytokine-induced apoptosis inhibitor 1 (CIAPIN1) is a newly identified anti-apoptotic molecule. Our previous studies have demonstrated that CIAPIN1 is ubiquitously expressed in normal fetal and adult human tissues and confers multidrug resistance in gastric cancer cells, possibly by upregulating the expression of multidrug resistance gene 1 and multidrug resistance-related protein 1. However, fundamental biological functions of CIAPIN1 have not been elucidated. In this study, we first predicted the subcellular localization of CIAPIN1 with bioinformatic approaches and then characterized the intracellular localization of CIAPIN1 in both human and mouse cells by a combination of techniques including (a)immunohistochemistry and immunofluorescence, (b) His-tagged CIAPIN1 expression, and (c)subcellular fractionation and analysis of CIAPIN1 in the fractions by Western blotting. All methods produced consistent results; CIAPIN1 was localized in both the cytoplasm and the nucleus and was accumulated in the nucleolus. Bioinformatic prediction disclosed a putative nuclear localization signal and a putative nuclear export signal within both human and mouse CIAPIN1. These findings suggest that CIAPIN1 may undergo a cytoplasmnucleusnucleolus translocation. (J Histochem Cytochem 54:14371444, 2006)
Key Words: cytokine-induced apoptosis inhibitor 1 subcellular localization immunofluorescence nucleolus cell fractionation bioinformatic analysis
CYTOKINE-INDUCED APOPTOSIS INHIBITOR 1 (CIAPIN1, formally named anamorsin) is a newly identified anti-apoptotic molecule that is proven to be a mediator of RAS signaling pathway and plays a vitally important role in fetal liver hematopoiesis (Shibayama et al. 2004 radiation, and stauroporine in vitro (Shibayama et al. 2004
Proteins are evolved to function optimally in a specific subcellular localization, and the correct transportation of a protein to its final destination is crucial to its function. Therefore, revealing the subcellular localization of a specific protein often provides important information for the elucidation of its function. In the study conducted by Shibayama et al. (2004)
Tissue Specimens Use of human tissues in this study was approved by the Institutional Review Board of the Fourth Military Medical University, Shaanxi Province, China and was done in accordance with international guidelines for the use of human tissues. Normal fetal tissues including skeletal muscle and colon and adult tissues including brain and gastric mucosa were from tissue microarrays EC01-001 and NC01-001 (Cybrdi; Xi'an, China), respectively. Fetal tissues were obtained from a normal 4- to 5-gestational day fetus. Adult tissues were obtained from a healthy 45-year-old man. All tissues were formalin fixed and paraffin embedded.
Antibodies
Cells and Culture
IHC and Immunofluorescence For immunofluorescence, cells (both transfected and untransfected) grown on coverslides were immediately placed on ice, washed twice with chilled PBS, incubated for 5 min with chilled methanol and 30 sec with chilled acetone, and then dried at room temperature. Upon immunostaining, coverslips were incubated with the primary antibody (anti-CIAPIN1 MAb, 1:400 diluted and anti-6xHis MAb, 1:200 diluted) in PBST supplemented with 3% BSA at 4C overnight. After being rinsed three times for 10 min each in PBST, coverslips were incubated with TRITC-conjugated goat anti-mouse IgG (1:200 diluted in PBST plus 1% BSA; Beijing Zhongshan Biotechnology Co., Beijing, China) at room temperature for1hr and were then thoroughly rinsed again. Nuclei were stained with Hoechst 33,258. After being washed, cells were observedunder a fluorescence microscope. Fluorescence images were taken under an Olympus BX51 microscope equipped with DP70 digital camera and the DPManager (DPController) software.
Plasmid Construction, Cell Transfection, and Anti-His Tag MAb Immunostaining Transfection was carried out using Lipofectamine 2000 (Invitrogen; Carlsbad, CA) following the manufacturer's instructions. Briefly, 24 hr before transfection, cells (2 x 105 cells/well) were seeded into a six-well plate with sterile coverslips placed on the bottom of the wells. Upon transfection, the old medium was replaced with fresh serum-free DMEM, and the transfection complex was added. Eight hr later, the medium containing transfection complex was replaced with fresh DMEM supplemented with FCS. Forty eight hr after transfection, the coverslips were removed, fixed, and subjected to immunofluorescent staining as described above except that mouse anti-6xHis tag MAb was used as the primary antibody. Untransfected cells were processed just as described above to serve as controls.
Analytical Cell Fractionation Cells, cytoplasm, nuclei, nucleoplasm, and nucleoli were all lysed with RIPA buffer (50 mM TrisHCl, pH 8.0, 150 mM NaCl, 0.1% SDS, 1% Nonidet P-40, 0.5% sodium deoxycholate, 0.02% sodium azide, 100 µg/ml PMSF, 1 µg/ml aprotinin) for 30 min on ice. Concentration of total proteins was measured by the Bradford assay. For examination of the quality of cell fractionation, 100 µg (each lane) of protein was separated on a 15% polyacrylamide gel and stained with Coomassie Brilliant Blue. For Western blotting, 50 µg total proteins was loaded on each lane and separated on a 12% SDS-polyacrylamide gel and blotted onto nitrocellulose membrane (Millipore; Bedford, MA) using a semidry transfer system (BioRad; Hercules, CA). After being blocked in 5% non-fat milk at room temperature for 30 min, the membrane was incubated in the primary antibodies (anti-CIAPIN1 MAb, 1:400; anti-GAPDH, histone H1, and fibrillarin antibodies, 1:500; diluted in 2.5% non-fat milkPBST) overnight.After incubation in HRP-conjugated goat anti-mouse IgG (1:2000; Beijing Zhongshan Biotechnology Co.) for 1 hr at room temperature and washed with PBST four times, the blot was detected with an enhanced chemiluminescent method (Amersham Pharmacia Biotech; Sunnyvale, CA).
Bioinformatics Analysis
IHC and Immunofluorescence We first performed IHC staining to observe subcellular localization of CIAPIN1 in normal human tissues including fetal skeletal muscle, fetal colonic mucosa, adult brain, and adult gastric mucosa. As shown in Figure 1 under high magnification, immunostaining of both the cytoplasm and nucleus was clearly observed inthe cells. Within the nucleus of some of these cells, structures similar to the nucleoli were identified. To achieve a higher resolution of the cell structure, we examined the intracellular distribution of CIAPIN1 in cultured cell lines including both human cells including normal cells HEK293 and QZG, hepatic cancer cells HepG2, and mouse fibroblast NIH3T3 cells with immunofluorescence. Results showed that although the overall intensity of CIAPIN1 immunostaining varied among cell types, distribution of the immunopositive signal diffused throughout the cells with the strongest staining in the nucleolus. Nonspecific immunostaining was strictly excluded by replacing anti-CIAPIN1 antibody with preimmune mouse serum (Figure 2A ).
Subcellular Localization by His-tagged CIAPIN1 Expression We subsequently constructed the 6xHis-tagged CIAPIN1-expressing vector pcDNA3.1/V5-His-hCIAPIN1, transfected it into HEK293 and NIH3T3 cells, and immunofluorescently detected the subcellular distribution of exogenously expressed His-tagged hCIAPIN1 protein. As shown in Figure 2B, eukaryotic expression vector pcDNA3.1/V5-His mediated a high-level expression of His-tagged hCIAPIN1, resulting in a relatively strong overall immunofluorescent signal within cells. Distribution pattern of His-tagged hCIAPIN1 was identical to that of anti-CIAPIN1 immunostaining within untransfected cells.
Distribution of CIAPIN1 Among Cell Fractions
Western blotting detection of the cell fractions with anti-CIAPIN1 MAb demonstrated a band of 39 kDa on each lane of total cell proteins, cytoplasm, nucleus, nucleoplasm, or nucleoli of HepG2 cells (Figure 3B), further confirming the subcellular localization demonstrated by the above means.
Bioinformatic Predictions Disclosed a Putative Nuclear Localization Signal (NLS) and a Putative NES
Interestingly, the motif of (R/K)(R/K)X(R/K) residues has been identified to also be conserved in a number of nucleolar localization signal (NoLS) domains (Horke et al. 2004 In addition, NetNES 1.1 analysis revealed a putative leucine-rich NES within CIAPIN1 (amino acids 115127, LCSALTLSGLVEV for hCIAPIN1 and amino acids 7181, LCSALTLSGLV for mCIAPIN1).
In our previous study, IHC staining of human and mouse tissues demonstrated that CIAPIN1 was localized to both the cytoplasm and the nuclei. To verify this finding, we further performed immunofluorescence, 6xHis-tagged fusion protein expression, and analytical cell fractionation in our present study. Results obtained by IHC and immunofluorescence, as well as 6xHis-tagged fusion protein expression, all demonstrated that both endogenously and exogenously expressed CIAPIN1 was localized to the cytoplasm and the nucleus and was accumulated in the nucleolus in both human and mouse cells. These results were further supported by analytical cell fractionation. In addition, bioinformatic prediction suggested that CIAPIN1 contains a NLS and a NES. Based on the above results, we postulate that CIAPIN1 may undergo a cytoplasmnucleusnucleolus translocation, which might be important for the functioning of CIAPIN1.
Protein shuttling between nucleus and cytoplasm involves competitive interactions between NLS and NES or is mediated by a newly identified class of nucleocytoplasmic shuttling signals, which serves as both NLS and NES (Michael 2000 CIAPIN1 contains a KKRK tetrapeptide and the amino acid sequence neighboring this tetrapeptide is rich in basic amino acids, satisfying the criteria for a consensus NLS sequence. NetNES 1.1 program based on NESbase version 1.0 database disclosed a putative NES within both hCIAPIN1 and mCIAPIN1. These predicted results were consistent with and supported our experimentally verified subcellular localization of CIAPIN1.
A prominent feature of the subcellular localization of CIAPIN1 revealed in this study is its accumulation in the nucleolus. The subnuclear localization of proteins is either established because of specific signal sequences (e.g., NoLS) or is determined via interaction with specific molecules. Although analysis of the protein composition of the nucleolus does not lead to the identification of a general nucleolar targeting signal, it has been reported that the tetrapeptide R/K(R/K)X(R/K) motif appears as single or multiple copies in a region enriched with basic and hydrophilic amino acids and serves as the NoLS in a number of nucleolar proteins (Schmidt et al. 1995
The major role of the nucleolus is in ribosome subunit biogenesis. In the nucleolus, which is considered a "cellular factory", 28S, 18S, and 5.8S rRNAs are transcribed and, together with 5S rRNA, processed and assembled into the ribosome subunits. Recent studies have suggested that there may be additional functions for the nucleolus (Pederson 1998a In conclusion, our preliminary study demonstrated that CIAPIN1 is localized in the cytoplasm and the nucleus and is accumulated in the nucleolus in both human and mouse cells. These findings suggest that CIAPIN1 may undergo a cytoplasmnucleusnucleolus translocation. Further studies are prompted to clarify the significance of the nuclear localization and the predominant nucleolar accumulation of CIAPIN1. Putative NLS and NES within CIAPIN1 also remain to be substantiated.
This work was supported by a grant from the Chinese National Foundation of Natural Sciences (No. 30471989).
Received for publication March 3, 2006; accepted August 9, 2006
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